J3_4U1V_073

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4U1V|1|DA|A|504, 4U1V|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_073 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0884

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4U1V|1|DA|G|30
4U1V|1|DA|C|31
*
4U1V|1|DA|G|474
4U1V|1|DA|C|475
4U1V|1|DA|G|476
4U1V|1|DA|A|477
4U1V|1|DA|A|478
4U1V|1|DA|A|479
4U1V|1|DA|A|480
4U1V|1|DA|G|481
4U1V|1|DA|A|482
4U1V|1|DA|A|483
4U1V|1|DA|C|484
*
4U1V|1|DA|G|496
4U1V|1|DA|A|497
4U1V|1|DA|G|498
4U1V|1|DA|U|499
4U1V|1|DA|G|500
4U1V|1|DA|A|501
4U1V|1|DA|A|502
4U1V|1|DA|A|503
4U1V|1|DA|A|504
4U1V|1|DA|A|505
4U1V|1|DA|G|506
4U1V|1|DA|A|507
4U1V|1|DA|A|508
4U1V|1|DA|C|509
4U1V|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24