3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
4U1V|1|DA|U|2833, 4U1V|1|DA|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U1V_089 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1651
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

4U1V|1|DA|G|2812
4U1V|1|DA|A|2813
4U1V|1|DA|A|2814
4U1V|1|DA|C|2815
*
4U1V|1|DA|G|2831
4U1V|1|DA|U|2832
4U1V|1|DA|U|2833
4U1V|1|DA|G|2834
4U1V|1|DA|A|2835
4U1V|1|DA|U|2836
*
4U1V|1|DA|A|2882
4U1V|1|DA|A|2883
4U1V|1|DA|U|2884
4U1V|1|DA|G|2885
4U1V|1|DA|A|2886
4U1V|1|DA|A|2887
4U1V|1|DA|C|2888

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D0
50S ribosomal protein L32
Chain DD
50S ribosomal protein L3
Chain DN
50S ribosomal protein L17

Coloring options:


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