J3_4U24_056
3D structure
- PDB id
- 4U24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to dalfopristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 4U24|1|BA|A|504, 4U24|1|BA|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U24_056 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.0524
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4U24|1|BA|G|30
4U24|1|BA|C|31
*
4U24|1|BA|G|474
4U24|1|BA|C|475
4U24|1|BA|G|476
4U24|1|BA|A|477
4U24|1|BA|A|478
4U24|1|BA|A|479
4U24|1|BA|A|480
4U24|1|BA|G|481
4U24|1|BA|A|482
4U24|1|BA|A|483
4U24|1|BA|C|484
*
4U24|1|BA|G|496
4U24|1|BA|A|497
4U24|1|BA|G|498
4U24|1|BA|U|499
4U24|1|BA|G|500
4U24|1|BA|A|501
4U24|1|BA|A|502
4U24|1|BA|A|503
4U24|1|BA|A|504
4U24|1|BA|A|505
4U24|1|BA|G|506
4U24|1|BA|A|507
4U24|1|BA|A|508
4U24|1|BA|C|509
4U24|1|BA|C|510
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BQ
- 50S ribosomal protein L20
- Chain BS
- 50S ribosomal protein L22
- Chain BU
- 50S ribosomal protein L24
Coloring options: