J3_4U25_010

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

4U25|1|AA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U25_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0762

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4U25|1|AA|U|1073
4U25|1|AA|G|1074
*
4U25|1|AA|U|1083
4U25|1|AA|G|1084
4U25|1|AA|U|1085
4U25|1|AA|U|1086
4U25|1|AA|G|1087
*
4U25|1|AA|C|1098
4U25|1|AA|G|1099
4U25|1|AA|C|1100
4U25|1|AA|A|1101
4U25|1|AA|A|1102

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5