J3_4U25_022
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_022 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0496
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn in J3
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
4U25|1|BA|C|2091
4U25|1|BA|U|2092
4U25|1|BA|G|2093
*
4U25|1|BA|C|2196
4U25|1|BA|U|2197
4U25|1|BA|A|2198
4U25|1|BA|A|2199
4U25|1|BA|C|2200
*
4U25|1|BA|G|2223
4U25|1|BA|G|2224
4U25|1|BA|A|2225
4U25|1|BA|C|2226
4U25|1|BA|A|2227
4U25|1|BA|G|2228
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain BH
- 50S ribosomal protein L9
- Chain BX
- 50S ribosomal protein L28
- Chain CD
- 30S ribosomal protein S4
Coloring options: