J3_4U25_026
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 4U25|1|BA|U|2833, 4U25|1|BA|A|2835, 4U25|1|BA|U|2884, 4U25|1|BA|G|2885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_026 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.0957
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4U25|1|BA|G|2812
4U25|1|BA|A|2813
4U25|1|BA|A|2814
4U25|1|BA|C|2815
*
4U25|1|BA|G|2831
4U25|1|BA|U|2832
4U25|1|BA|U|2833
4U25|1|BA|G|2834
4U25|1|BA|A|2835
4U25|1|BA|U|2836
*
4U25|1|BA|A|2882
4U25|1|BA|A|2883
4U25|1|BA|U|2884
4U25|1|BA|G|2885
4U25|1|BA|A|2886
4U25|1|BA|A|2887
4U25|1|BA|C|2888
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L3
- Chain BN
- 50S ribosomal protein L17
- Chain BS
- 50S ribosomal protein L22
Coloring options: