J3_4U25_045

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4U25|1|DA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U25_045 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1531

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4U25|1|DA|C|1306
4U25|1|DA|A|1307
4U25|1|DA|A|1308
4U25|1|DA|G|1309
*
4U25|1|DA|C|1605
4U25|1|DA|C|1606
4U25|1|DA|C|1607
4U25|1|DA|A|1608
4U25|1|DA|A|1609
4U25|1|DA|A|1610
4U25|1|DA|C|1611
*
4U25|1|DA|G|1620
4U25|1|DA|U|1621
4U25|1|DA|G|1622

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34