J3_4U25_056
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCUA
- Length
- 27 nucleotides
- Bulged bases
- 4U25|1|AA|A|975, 4U25|1|AA|G|976, 4U25|1|AA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_056 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.1639
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4U25|1|AA|U|955
4U25|1|AA|U|956
4U25|1|AA|U|957
4U25|1|AA|A|958
4U25|1|AA|A|959
4U25|1|AA|U|960
4U25|1|AA|U|961
4U25|1|AA|C|962
*
4U25|1|AA|G|973
4U25|1|AA|A|974
4U25|1|AA|A|975
4U25|1|AA|G|976
4U25|1|AA|A|977
4U25|1|AA|A|978
4U25|1|AA|C|979
4U25|1|AA|C|980
4U25|1|AA|U|981
4U25|1|AA|U|982
4U25|1|AA|A|983
4U25|1|AA|C|984
4U25|1|AA|C|985
*
4U25|1|AA|G|1220
4U25|1|AA|G|1221
4U25|1|AA|G|1222
4U25|1|AA|C|1223
4U25|1|AA|U|1224
4U25|1|AA|A|1225
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AJ
- 30S ribosomal protein S10
- Chain AM
- 30S ribosomal protein S13
- Chain AN
- 30S ribosomal protein S14
- Chain AS
- 30S ribosomal protein S19
Coloring options: