J3_4U26_037

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U26_037 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1524

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4U26|1|DA|G|30
4U26|1|DA|C|31
*
4U26|1|DA|G|474
4U26|1|DA|C|475
4U26|1|DA|G|476
4U26|1|DA|A|477
4U26|1|DA|A|478
4U26|1|DA|A|479
4U26|1|DA|A|480
4U26|1|DA|G|481
*
4U26|1|DA|C|509
4U26|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DU

50S ribosomal protein L24