J3_4U26_067

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4U26|1|DA|A|504, 4U26|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U26_067 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.105

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4U26|1|DA|G|30
4U26|1|DA|C|31
*
4U26|1|DA|G|474
4U26|1|DA|C|475
4U26|1|DA|G|476
4U26|1|DA|A|477
4U26|1|DA|A|478
4U26|1|DA|A|479
4U26|1|DA|A|480
4U26|1|DA|G|481
4U26|1|DA|A|482
4U26|1|DA|A|483
4U26|1|DA|C|484
*
4U26|1|DA|G|496
4U26|1|DA|A|497
4U26|1|DA|G|498
4U26|1|DA|U|499
4U26|1|DA|G|500
4U26|1|DA|A|501
4U26|1|DA|A|502
4U26|1|DA|A|503
4U26|1|DA|A|504
4U26|1|DA|A|505
4U26|1|DA|G|506
4U26|1|DA|A|507
4U26|1|DA|A|508
4U26|1|DA|C|509
4U26|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24