3D structure

PDB id
4U27 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4U27|1|AA|A|975, 4U27|1|AA|G|976, 4U27|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U27_006 not in the Motif Atlas
Geometric match to J3_5J7L_006
Geometric discrepancy: 0.0733
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4U27|1|AA|U|955
4U27|1|AA|U|956
4U27|1|AA|U|957
4U27|1|AA|A|958
4U27|1|AA|A|959
4U27|1|AA|U|960
4U27|1|AA|U|961
4U27|1|AA|C|962
*
4U27|1|AA|G|973
4U27|1|AA|A|974
4U27|1|AA|A|975
4U27|1|AA|G|976
4U27|1|AA|A|977
4U27|1|AA|A|978
4U27|1|AA|C|979
4U27|1|AA|C|980
4U27|1|AA|U|981
4U27|1|AA|U|982
4U27|1|AA|A|983
4U27|1|AA|C|984
*
4U27|1|AA|G|1221
4U27|1|AA|G|1222
4U27|1|AA|C|1223
4U27|1|AA|U|1224
4U27|1|AA|A|1225

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19

Coloring options:


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