J3_4U27_038

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U27_038 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1433

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4U27|1|DA|G|30
4U27|1|DA|C|31
*
4U27|1|DA|G|474
4U27|1|DA|C|475
4U27|1|DA|G|476
4U27|1|DA|A|477
4U27|1|DA|A|478
4U27|1|DA|A|479
4U27|1|DA|A|480
4U27|1|DA|G|481
*
4U27|1|DA|C|509
4U27|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DU

50S ribosomal protein L24