3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AG*CGCAAAU*AGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3M_047 not in the Motif Atlas
Geometric match to J3_4V88_078
Geometric discrepancy: 0.0462
The information below is about J3_4V88_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.1
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

4U3M|1|6|A|41
4U3M|1|6|G|42
*
4U3M|1|6|C|433
4U3M|1|6|G|434
4U3M|1|6|C|435
4U3M|1|6|A|436
4U3M|1|6|A|437
4U3M|1|6|A|438
4U3M|1|6|U|439
*
4U3M|1|6|A|464
4U3M|1|6|G|465
4U3M|1|6|U|466

Current chains

Chain 6
18S rRNA

Nearby chains

Chain d3
40S ribosomal protein S23-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


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