J3_4U3M_047

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U3M_047 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0462

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4U3M|1|6|A|41
4U3M|1|6|G|42
*
4U3M|1|6|C|433
4U3M|1|6|G|434
4U3M|1|6|C|435
4U3M|1|6|A|436
4U3M|1|6|A|437
4U3M|1|6|A|438
4U3M|1|6|U|439
*
4U3M|1|6|A|464
4U3M|1|6|G|465
4U3M|1|6|U|466

Current chains

Chain 6

18S rRNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s9

40S ribosomal protein S9-A