3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
4U3M|1|6|U|1473, 4U3M|1|6|G|1539
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3M_059 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.0944
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

4U3M|1|6|C|1470
4U3M|1|6|A|1471
4U3M|1|6|C|1472
4U3M|1|6|U|1473
4U3M|1|6|G|1474
*
4U3M|1|6|C|1533
4U3M|1|6|G|1534
4U3M|1|6|U|1535
4U3M|1|6|G|1536
4U3M|1|6|C|1537
4U3M|1|6|U|1538
4U3M|1|6|G|1539
4U3M|1|6|G|1540
*
4U3M|1|6|C|1571
4U3M|1|6|G|1572
4U3M|1|6|A|1573
4U3M|1|6|G|1574

Current chains

Chain 6
18S rRNA

Nearby chains

Chain c8
40S ribosomal protein S18-A
Chain c9
40S ribosomal protein S19-A
Chain d5
40S ribosomal protein S25-A
Chain s5
40S ribosomal protein S5

Coloring options:


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