3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3U_022 not in the Motif Atlas
Homologous match to J3_4V88_036
Geometric discrepancy: 0.0883
The information below is about J3_4V88_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.2
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4U3U|1|2|U|1168
4U3U|1|2|G|1169
4U3U|1|2|G|1170
4U3U|1|2|A|1171
*
4U3U|1|2|U|1468
4U3U|1|2|A|1469
4U3U|1|2|C|1470
*
4U3U|1|2|G|1574
4U3U|1|2|G|1575
4U3U|1|2|A|1576
4U3U|1|2|A|1577

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain C8
40S ribosomal protein S18-A
Chain C9
40S ribosomal protein S19-A
Chain S5
40S ribosomal protein S5

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1173 s