3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3U_026 not in the Motif Atlas
Homologous match to J3_8C3A_085
Geometric discrepancy: 0.0587
The information below is about J3_8C3A_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.2
Basepair signature
cWW-F-F-F-F-tSS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

4U3U|1|2|U|1293
4U3U|1|2|G|1294
*
4U3U|1|2|U|1303
4U3U|1|2|G|1304
4U3U|1|2|U|1305
4U3U|1|2|C|1306
*
4U3U|1|2|G|1318
4U3U|1|2|A|1319
4U3U|1|2|U|1320
4U3U|1|2|A|1321
4U3U|1|2|A|1322

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C7
40S ribosomal protein S17-A
Chain S0
40S ribosomal protein S0-A
Chain S2
40S ribosomal protein S2

Coloring options:


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