J3_8C3A_085

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8C3A|1|CM|U|1278
8C3A|1|CM|G|1279
*
8C3A|1|CM|U|1288
8C3A|1|CM|G|1289
8C3A|1|CM|U|1290
8C3A|1|CM|C|1291
*
8C3A|1|CM|G|1303
8C3A|1|CM|A|1304
8C3A|1|CM|U|1305
8C3A|1|CM|A|1306
8C3A|1|CM|A|1307

Current chains

Chain CM

18S

Nearby chains

Chain CN

40S ribosomal protein S0

Chain CP

Ribosomal protein S5

Chain DE

40S ribosomal protein S17-B