J3_4U4O_007

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGG*CAC

Length

25 nucleotides

Bulged bases

4U4O|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U4O_007 not in the Motif Atlas

Geometric match to J3_5TBW_089

Geometric discrepancy: 0.1274

The information below is about J3_5TBW_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32853.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-tWW-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4U4O|1|1|G|1230
4U4O|1|1|A|1231
4U4O|1|1|C|1232
4U4O|1|1|G|1233
4U4O|1|1|G|1234
4U4O|1|1|U|1235
4U4O|1|1|G|1236
4U4O|1|1|G|1237
4U4O|1|1|C|1238
*
4U4O|1|1|G|1250
4U4O|1|1|A|1251
4U4O|1|1|A|1252
4U4O|1|1|U|1253
4U4O|1|1|C|1254
4U4O|1|1|C|1255
4U4O|1|1|G|1256
4U4O|1|1|C|1257
4U4O|1|1|U|1258
4U4O|1|1|A|1259
4U4O|1|1|A|1260
4U4O|1|1|G|1261
4U4O|1|1|G|1262
*
4U4O|1|1|C|1277
4U4O|1|1|A|1278
4U4O|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains