J3_4U4O_031
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 4U4O|1|5|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4O_031 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0959
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4U4O|1|5|U|502
4U4O|1|5|C|503
*
4U4O|1|5|G|588
4U4O|1|5|A|589
4U4O|1|5|G|590
4U4O|1|5|G|591
4U4O|1|5|A|592
4U4O|1|5|C|593
4U4O|1|5|U|594
4U4O|1|5|G|595
4U4O|1|5|C|596
4U4O|1|5|G|597
*
4U4O|1|5|C|606
4U4O|1|5|A|607
4U4O|1|5|A|608
4U4O|1|5|G|609
4U4O|1|5|G|610
4U4O|1|5|A|611
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain l6
- 60S ribosomal protein L6-A
- Chain l7
- 60S ribosomal protein L7-A
- Chain o2
- 60S ribosomal protein L32
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