Motif J3_15033.1 Version J3_15033.1 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 1-17 | 9-12 | 10-11 | 15-16 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_050 | 8C3A | 0.0000 | 1 | 1 | LSU rRNA | G | 586 | A | 587 | G | 588 | G | 589 | A | 590 | C | 591 | U | 592 | G | 593 | C | 594 | G | 595 | * | C | 604 | A | 606 | G | 607 | G | 608 | A | 609 | * | U | 497 | C | 498 | cWW | ncWS | cWW | cWW |
| 2 | J3_5TBW_003 | 5TBW | 0.0979 | 1 | 1 | LSU rRNA | G | 588 | A | 589 | G | 590 | G | 591 | A | 592 | C | 593 | U | 594 | G | 595 | C | 596 | G | 597 | * | C | 606 | A | 608 | G | 609 | G | 610 | A | 611 | * | U | 502 | C | 503 | cWW | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GAGGACUGCG*CUAGGA | 1 |
| UC*GAGGACUGCG*CAAGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AGGACUGC*UAGG | 1 |
| *AGGACUGC*AAGG | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: