3D structure

PDB id
4U4R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Lactimidomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
4U4R|1|5|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U4R_032 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.045
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

4U4R|1|5|U|502
4U4R|1|5|C|503
*
4U4R|1|5|G|588
4U4R|1|5|A|589
4U4R|1|5|G|590
4U4R|1|5|G|591
4U4R|1|5|A|592
4U4R|1|5|C|593
4U4R|1|5|U|594
4U4R|1|5|G|595
4U4R|1|5|C|596
4U4R|1|5|G|597
*
4U4R|1|5|C|606
4U4R|1|5|A|607
4U4R|1|5|A|608
4U4R|1|5|G|609
4U4R|1|5|G|610
4U4R|1|5|A|611

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain l6
60S ribosomal protein L6-A
Chain l7
60S ribosomal protein L7-A
Chain o2
60S ribosomal protein L32

Coloring options:


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