J3_4U4U_070
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 4U4U|1|1|C|2760, 4U4U|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4U_070 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0515
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4U4U|1|1|G|2651
4U4U|1|1|U|2652
4U4U|1|1|C|2653
*
4U4U|1|1|G|2754
4U4U|1|1|C|2755
4U4U|1|1|C|2756
4U4U|1|1|U|2757
4U4U|1|1|A|2758
4U4U|1|1|U|2759
4U4U|1|1|C|2760
4U4U|1|1|G|2761
4U4U|1|1|A|2762
4U4U|1|1|U|2763
4U4U|1|1|C|2764
4U4U|1|1|C|2765
*
4U4U|1|1|G|2793
4U4U|1|1|G|2794
4U4U|1|1|U|2795
4U4U|1|1|G|2796
4U4U|1|1|C|2797
4U4U|1|1|C|2798
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N8
- 60S ribosomal protein L28
- Chain Q2
- 60S ribosomal protein L42-A
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