J3_4U4Y_025
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 4U4Y|1|2|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4Y_025 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1063
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4U4Y|1|2|U|1283
4U4Y|1|2|C|1284
4U4Y|1|2|U|1285
4U4Y|1|2|U|1286
4U4Y|1|2|A|1287
4U4Y|1|2|G|1288
*
4U4Y|1|2|C|1327
4U4Y|1|2|G|1328
4U4Y|1|2|A|1329
4U4Y|1|2|G|1330
4U4Y|1|2|A|1331
4U4Y|1|2|C|1332
*
4U4Y|1|2|G|1419
4U4Y|1|2|C|1420
4U4Y|1|2|A|1421
4U4Y|1|2|A|1422
4U4Y|1|2|U|1423
4U4Y|1|2|A|1424
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- 40S ribosomal protein S17-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S2
- 40S ribosomal protein S2
- Chain S3
- 40S ribosomal protein S3
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