3D structure

PDB id
4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Pactamycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
4U4Y|1|5|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U4Y_032 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.0562
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

4U4Y|1|5|U|502
4U4Y|1|5|C|503
*
4U4Y|1|5|G|588
4U4Y|1|5|A|589
4U4Y|1|5|G|590
4U4Y|1|5|G|591
4U4Y|1|5|A|592
4U4Y|1|5|C|593
4U4Y|1|5|U|594
4U4Y|1|5|G|595
4U4Y|1|5|C|596
4U4Y|1|5|G|597
*
4U4Y|1|5|C|606
4U4Y|1|5|A|607
4U4Y|1|5|A|608
4U4Y|1|5|G|609
4U4Y|1|5|G|610
4U4Y|1|5|A|611

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain l6
60S ribosomal protein L6-A
Chain l7
60S ribosomal protein L7-A
Chain o2
60S ribosomal protein L32

Coloring options:


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