J3_4U4Y_034
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4Y_034 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.119
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4U4Y|1|5|U|829
4U4Y|1|5|A|830
4U4Y|1|5|G|831
*
4U4Y|1|5|C|863
4U4Y|1|5|G|864
4U4Y|1|5|U|865
4U4Y|1|5|A|866
4U4Y|1|5|G|867
*
4U4Y|1|5|U|892
4U4Y|1|5|C|893
4U4Y|1|5|G|894
4U4Y|1|5|A|895
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain o4
- 60S ribosomal protein L34-A
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