J3_4U4Y_078
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 4U4Y|1|5|A|398, 4U4Y|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4Y_078 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0411
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4U4Y|1|5|A|369
4U4Y|1|5|U|370
4U4Y|1|5|G|371
4U4Y|1|5|A|372
4U4Y|1|5|A|373
4U4Y|1|5|A|374
4U4Y|1|5|A|375
4U4Y|1|5|G|376
4U4Y|1|5|A|377
4U4Y|1|5|A|378
4U4Y|1|5|C|379
*
4U4Y|1|5|G|390
4U4Y|1|5|A|391
4U4Y|1|5|G|392
4U4Y|1|5|U|393
4U4Y|1|5|G|394
4U4Y|1|5|A|395
4U4Y|1|5|A|396
4U4Y|1|5|A|397
4U4Y|1|5|A|398
4U4Y|1|5|A|399
4U4Y|1|5|G|400
4U4Y|1|5|U|401
4U4Y|1|5|A|402
4U4Y|1|5|C|403
4U4Y|1|5|G|404
*
4U4Y|1|8|C|19
4U4Y|1|8|U|20
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain m7
- 60S ribosomal protein L17-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o9
- 60S ribosomal protein L39
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