3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUAG*CGUAG*UCGAAU
Length
15 nucleotides
Bulged bases
4U50|1|1|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U50_005 not in the Motif Atlas
Homologous match to J3_5TBW_005
Geometric discrepancy: 0.0534
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

4U50|1|1|A|828
4U50|1|1|U|829
4U50|1|1|A|830
4U50|1|1|G|831
*
4U50|1|1|C|863
4U50|1|1|G|864
4U50|1|1|U|865
4U50|1|1|A|866
4U50|1|1|G|867
*
4U50|1|1|U|892
4U50|1|1|C|893
4U50|1|1|G|894
4U50|1|1|A|895
4U50|1|1|A|896
4U50|1|1|U|897

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L2
60S ribosomal protein L2-A
Chain M9
60S ribosomal protein L19-A
Chain O4
60S ribosomal protein L34-A
Chain Q3
60S ribosomal protein L43-A

Coloring options:


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