3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
4U50|1|5|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U50_043 not in the Motif Atlas
Homologous match to J3_8C3A_010
Geometric discrepancy: 0.1192
The information below is about J3_8C3A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

4U50|1|5|C|2664
4U50|1|5|U|2665
4U50|1|5|C|2666
*
4U50|1|5|G|2690
4U50|1|5|A|2691
4U50|1|5|A|2692
*
4U50|1|5|U|2701
4U50|1|5|A|2702
4U50|1|5|A|2703
4U50|1|5|A|2704
4U50|1|5|A|2705
4U50|1|5|G|2706

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain l5
60S ribosomal protein L5
Chain m1
60S ribosomal protein L11-B
Chain n1
60S ribosomal protein L21-A
Chain sM
Suppressor protein STM1

Coloring options:


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