Motif J3_91491.5 Version J3_91491.5 of this group appears in releases 3.87 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	break		8		9		10	1-3	1-10	3-6	3-9	4-5	7-8
1	J3_7A0S_010	7A0S	0.2670	2	X	LSU rRNA	U	2311	A	2312	A	2314	G	2316	*	C	2274	U	2275	C	2276	*	G	2300	A	2301	G	2302		cWW		ncWB	cWW	cWW
2	J3_8C3A_010	8C3A	0.1846	2	1	LSU rRNA	U	2673	A	2674	A	2676	G	2678	*	C	2636	U	2637	C	2638	*	G	2662	A	2663	A	2664		cWW	tHW	ntWW	cWW	cWW
3	J3_5TBW_013	5TBW	0.1548	2	1	LSU rRNA	U	2701	A	2702	A	2704	G	2706	*	C	2664	U	2665	C	2666	*	G	2690	A	2691	A	2692	ncSs	cWW	tHW	tWW	cWW	cWW
4	J3_4V9F_008	4V9F	0.0000	2	0	LSU rRNA	C	2366	A	2367	A	2369	G	2371	*	C	2329	U	2330	C	2331	*	G	2355	A	2356	G	2357		cWW	tHW	tWW	cWW	cWW
5	J3_4WF9_008	4WF9	0.1213	2	X	LSU rRNA	C	2359	A	2360	A	2362	G	2364	*	C	2322	U	2323	C	2324	*	G	2348	A	2349	G	2350		cWW	tHW	tWW	cWW	cWW
6	J3_8VTW_007	8VTW	0.1693	2	1A	LSU rRNA	U	2332	A	2333	A	2335	G	2337	*	C	2295	U	2296	C	2297	*	G	2321	A	2322	G	2323	ncSs	cWW	tHW	tWW	cWW	cWW
7	J3_5J7L_045	5J7L	0.2266	2	DA	LSU rRNA	C	2332	A	2333	A	2335	G	2337	*	C	2295	U	2296	A	2297	*	U	2321	A	2322	G	2323		cWW	tHW	tWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCGAGUAGAAG	2
CUCGAAUAAAAG	2
CUCGAGCAAAAG	1
CUCGAGCAUAAG	1
CUAUAGCAUAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAAAA	3
UAAGAA	2
UAAUAA	2

Release history

Release	3.87	3.88	3.89	3.90
Date	2024-08-14	2024-09-11	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-F-tWW-tHW-cWW-F-cWW
Heat map statistics: Min 0.12 | Avg 0.19 | Max 0.30

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Coloring options: Nucleotide numbers

Sequence	Counts
CUCGAGUAGAAG	2
CUCGAAUAAAAG	2
CUCGAGCAAAAG	1
CUCGAGCAUAAG	1
CUAUAGCAUAAG	1

Sequence	Counts
UAAAAA	3
UAAGAA	2
UAAUAA	2

Motif J3_91491.5 Version J3_91491.5 of this group appears in releases 3.87 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif J3_91491.5 Version J3_91491.5 of this group appears in releases 3.87 to 3.90

Download

Csv

Json