3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
4U50|1|1|U|343, 4U50|1|1|A|351, 4U50|1|4|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U50_062 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0434
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4U50|1|1|C|340
4U50|1|1|G|341
4U50|1|1|A|342
4U50|1|1|U|343
4U50|1|1|A|344
4U50|1|1|G|345
4U50|1|1|C|346
4U50|1|1|G|347
4U50|1|1|A|348
4U50|1|1|A|349
4U50|1|1|C|350
4U50|1|1|A|351
4U50|1|1|A|352
4U50|1|1|G|353
4U50|1|1|U|354
4U50|1|1|A|355
4U50|1|1|C|356
*
4U50|1|1|G|363
4U50|1|1|G|364
4U50|1|1|A|365
4U50|1|1|A|366
4U50|1|1|A|367
4U50|1|1|G|368
*
4U50|1|4|C|21
4U50|1|4|U|22
4U50|1|4|U|23
4U50|1|4|G|24

Current chains

Chain 1
25S ribosomal RNA
Chain 4
5.8S ribosomal RNA

Nearby chains

Chain L4
60S ribosomal protein L4-A
Chain N6
60S ribosomal protein L26-A
Chain O7
60S ribosomal protein L37-A
Chain O9
60S ribosomal protein L39

Coloring options:


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