3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AGACG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U50_067 not in the Motif Atlas
Homologous match to J3_8P9A_058
Geometric discrepancy: 0.0732
The information below is about J3_8P9A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

4U50|1|1|A|1654
4U50|1|1|G|1655
4U50|1|1|A|1656
4U50|1|1|C|1657
4U50|1|1|G|1658
*
4U50|1|1|C|1791
4U50|1|1|C|1792
*
4U50|1|1|G|1796
4U50|1|1|A|1797
4U50|1|1|A|1798
4U50|1|1|A|1799
4U50|1|1|A|1800
4U50|1|1|U|1801

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L2
60S ribosomal protein L2-A
Chain O4
60S ribosomal protein L34-A
Chain Q3
60S ribosomal protein L43-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.0962 s