J3_8P9A_058

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8P9A|1|AR|A|1654
8P9A|1|AR|G|1655
8P9A|1|AR|A|1656
8P9A|1|AR|C|1657
8P9A|1|AR|G|1658
*
8P9A|1|AR|C|1791
8P9A|1|AR|C|1792
*
8P9A|1|AR|G|1796
8P9A|1|AR|A|1797
8P9A|1|AR|A|1798
8P9A|1|AR|A|1799
8P9A|1|AR|A|1800
8P9A|1|AR|U|1801

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DI

60S ribosomal protein L34-A

Chain DR

60S ribosomal protein L43-A