J3_4U52_003
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 4U52|1|1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U52_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0396
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|1|U|502
4U52|1|1|C|503
*
4U52|1|1|G|588
4U52|1|1|A|589
4U52|1|1|G|590
4U52|1|1|G|591
4U52|1|1|A|592
4U52|1|1|C|593
4U52|1|1|U|594
4U52|1|1|G|595
4U52|1|1|C|596
4U52|1|1|G|597
*
4U52|1|1|C|606
4U52|1|1|A|607
4U52|1|1|A|608
4U52|1|1|G|609
4U52|1|1|G|610
4U52|1|1|A|611
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain L6
- 60S ribosomal protein L6-A
- Chain L7
- 60S ribosomal protein L7-A
- Chain O2
- 60S ribosomal protein L32
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