J3_4U52_007

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U52_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.0693

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4U52|1|1|G|1230
4U52|1|1|A|1231
4U52|1|1|C|1232
*
4U52|1|1|G|1256
4U52|1|1|C|1257
4U52|1|1|U|1258
4U52|1|1|A|1259
4U52|1|1|A|1260
4U52|1|1|G|1261
4U52|1|1|G|1262
*
4U52|1|1|C|1277
4U52|1|1|A|1278
4U52|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains