J3_4U52_020
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 4U52|1|2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U52_020 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1861
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|2|C|1037
4U52|1|2|U|1038
4U52|1|2|A|1039
*
4U52|1|2|U|1079
4U52|1|2|U|1080
4U52|1|2|A|1081
4U52|1|2|C|1082
4U52|1|2|G|1083
*
4U52|1|2|C|1090
4U52|1|2|A|1091
4U52|1|2|A|1092
4U52|1|2|A|1093
4U52|1|2|G|1094
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D1
- 40S ribosomal protein S21-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain D7
- 40S ribosomal protein S27-A
- Chain S0
- 40S ribosomal protein S0-A
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