J3_4U52_053
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U52_053 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.0663
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4U52|1|6|U|1168
4U52|1|6|G|1169
4U52|1|6|G|1170
4U52|1|6|A|1171
*
4U52|1|6|U|1468
4U52|1|6|A|1469
4U52|1|6|C|1470
*
4U52|1|6|G|1574
4U52|1|6|G|1575
4U52|1|6|A|1576
4U52|1|6|A|1577
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c8
- 40S ribosomal protein S18-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain s5
- 40S ribosomal protein S5
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