J3_4U52_071

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

4U52|1|2|A|46, 4U52|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U52_071 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0664

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U52|1|2|A|41
4U52|1|2|G|42
4U52|1|2|A|43
4U52|1|2|U|44
4U52|1|2|U|45
4U52|1|2|A|46
4U52|1|2|A|47
4U52|1|2|G|48
*
4U52|1|2|C|431
4U52|1|2|G|432
4U52|1|2|C|433
4U52|1|2|G|434
4U52|1|2|C|435
4U52|1|2|A|436
4U52|1|2|A|437
4U52|1|2|A|438
4U52|1|2|U|439
*
4U52|1|2|A|464
4U52|1|2|G|465
4U52|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S9

40S ribosomal protein S9-A