J3_4U53_005

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

4U53|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U53_005 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.0634

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4U53|1|1|A|828
4U53|1|1|U|829
4U53|1|1|A|830
4U53|1|1|G|831
*
4U53|1|1|C|863
4U53|1|1|G|864
4U53|1|1|U|865
4U53|1|1|A|866
4U53|1|1|G|867
*
4U53|1|1|U|892
4U53|1|1|C|893
4U53|1|1|G|894
4U53|1|1|A|895
4U53|1|1|A|896
4U53|1|1|U|897

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M9

60S ribosomal protein L19-A

Chain O4

60S ribosomal protein L34-A

Chain Q3

60S ribosomal protein L43-A