3D structure

PDB id
4U53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
4U53|1|2|G|1199, 4U53|1|2|G|1201, 4U53|1|2|A|1203
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U53_023 not in the Motif Atlas
Homologous match to J3_8P9A_078
Geometric discrepancy: 0.0839
The information below is about J3_8P9A_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4U53|1|2|C|1180
4U53|1|2|U|1181
4U53|1|2|U|1182
4U53|1|2|A|1183
4U53|1|2|A|1184
4U53|1|2|U|1185
4U53|1|2|U|1186
4U53|1|2|U|1187
*
4U53|1|2|G|1198
4U53|1|2|G|1199
4U53|1|2|G|1200
4U53|1|2|G|1201
4U53|1|2|A|1202
4U53|1|2|A|1203
4U53|1|2|A|1204
4U53|1|2|C|1205
4U53|1|2|U|1206
4U53|1|2|C|1207
4U53|1|2|A|1208
4U53|1|2|C|1209
*
4U53|1|2|G|1454
4U53|1|2|G|1455
4U53|1|2|C|1456
4U53|1|2|C|1457
4U53|1|2|G|1458

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C5
40S ribosomal protein S15
Chain C8
40S ribosomal protein S18-A
Chain D0
40S ribosomal protein S20
Chain D9
40S ribosomal protein S29-A
Chain E1
Ubiquitin-40S ribosomal protein S31
Chain SM
Suppressor protein STM1

Coloring options:


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