J3_4U53_085

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

4U53|1|6|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U53_085 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0423

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U53|1|6|A|41
4U53|1|6|G|42
4U53|1|6|A|43
4U53|1|6|U|44
4U53|1|6|U|45
4U53|1|6|A|46
4U53|1|6|A|47
4U53|1|6|G|48
*
4U53|1|6|C|431
4U53|1|6|G|432
4U53|1|6|C|433
4U53|1|6|G|434
4U53|1|6|C|435
4U53|1|6|A|436
4U53|1|6|A|437
4U53|1|6|A|438
4U53|1|6|U|439
*
4U53|1|6|A|464
4U53|1|6|G|465
4U53|1|6|U|466

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s9

40S ribosomal protein S9-A