J3_4U55_091

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U55_091 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.099

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4U55|1|5|G|1230
4U55|1|5|A|1231
4U55|1|5|C|1232
*
4U55|1|5|G|1256
4U55|1|5|C|1257
4U55|1|5|U|1258
4U55|1|5|A|1259
4U55|1|5|A|1260
4U55|1|5|G|1261
4U55|1|5|G|1262
*
4U55|1|5|C|1277
4U55|1|5|A|1278
4U55|1|5|C|1279

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

Unknown protein chain m2

Chain p0

60S acidic ribosomal protein P0