J3_4U56_064
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- AUGAAAAGAACU*AGAGUGAAAAAGUACG*CU
- Length
- 30 nucleotides
- Bulged bases
- 4U56|1|1|A|398, 4U56|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U56_064 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.1631
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4U56|1|1|A|369
4U56|1|1|U|370
4U56|1|1|G|371
4U56|1|1|A|372
4U56|1|1|A|373
4U56|1|1|A|374
4U56|1|1|A|375
4U56|1|1|G|376
4U56|1|1|A|377
4U56|1|1|A|378
4U56|1|1|C|379
4U56|1|1|U|380
*
4U56|1|1|A|389
4U56|1|1|G|390
4U56|1|1|A|391
4U56|1|1|G|392
4U56|1|1|U|393
4U56|1|1|G|394
4U56|1|1|A|395
4U56|1|1|A|396
4U56|1|1|A|397
4U56|1|1|A|398
4U56|1|1|A|399
4U56|1|1|G|400
4U56|1|1|U|401
4U56|1|1|A|402
4U56|1|1|C|403
4U56|1|1|G|404
*
4U56|1|4|C|19
4U56|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain N6
- 60S ribosomal protein L26-A
- Chain O9
- 60S ribosomal protein L39
Coloring options: