J3_4U56_088
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 4U56|1|6|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U56_088 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0534
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4U56|1|6|A|41
4U56|1|6|G|42
4U56|1|6|A|43
4U56|1|6|U|44
4U56|1|6|U|45
4U56|1|6|A|46
4U56|1|6|A|47
4U56|1|6|G|48
*
4U56|1|6|C|431
4U56|1|6|G|432
4U56|1|6|C|433
4U56|1|6|G|434
4U56|1|6|C|435
4U56|1|6|A|436
4U56|1|6|A|437
4U56|1|6|A|438
4U56|1|6|U|439
*
4U56|1|6|A|464
4U56|1|6|G|465
4U56|1|6|U|466
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain s9
- 40S ribosomal protein S9-A
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