J3_4U67_001

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.078

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

4U67|1|X|G|30
4U67|1|X|C|31
*
4U67|1|X|G|485
4U67|1|X|U|486
4U67|1|X|G|487
4U67|1|X|A|488
4U67|1|X|A|489
4U67|1|X|A|490
4U67|1|X|A|491
4U67|1|X|G|492
*
4U67|1|X|C|519
4U67|1|X|C|520

Current chains

Chain X

23s RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24