J3_4U67_004

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_004 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1185

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

4U67|1|X|C|711
4U67|1|X|A|712
4U67|1|X|G|713
*
4U67|1|X|C|745
4U67|1|X|G|746
4U67|1|X|A|747
4U67|1|X|A|748
4U67|1|X|C|749
*
4U67|1|X|G|773
4U67|1|X|A|774
4U67|1|X|U|775
4U67|1|X|G|776

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2