J3_4U67_006

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_006 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0805

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4U67|1|X|C|1311
4U67|1|X|G|1312
4U67|1|X|U|1313
4U67|1|X|A|1314
4U67|1|X|A|1315
4U67|1|X|G|1316
*
4U67|1|X|C|1641
4U67|1|X|G|1642
4U67|1|X|A|1643
*
4U67|1|X|U|1656
4U67|1|X|A|1657
4U67|1|X|A|1658
4U67|1|X|G|1659

Current chains

Chain X

23s RNA

Nearby chains