J3_4U67_018

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

4U67|1|X|C|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_018 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1179

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4U67|1|X|C|308
4U67|1|X|G|309
4U67|1|X|A|310
4U67|1|X|A|311
4U67|1|X|G|312
*
4U67|1|X|C|327
4U67|1|X|A|328
4U67|1|X|C|329
4U67|1|X|C|330
4U67|1|X|U|331
4U67|1|X|C|332
4U67|1|X|A|333
4U67|1|X|G|334
4U67|1|X|A|335
4U67|1|X|A|336
*
4U67|1|X|U|348
4U67|1|X|G|349
4U67|1|X|U|350
4U67|1|X|A|351
4U67|1|X|G|352

Current chains

Chain X

23s RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24