J3_4U6F_063

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGG*CAC

Length

25 nucleotides

Bulged bases

4U6F|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U6F_063 not in the Motif Atlas

Geometric match to J3_5TBW_089

Geometric discrepancy: 0.0668

The information below is about J3_5TBW_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32853.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-tWW-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4U6F|1|1|G|1230
4U6F|1|1|A|1231
4U6F|1|1|C|1232
4U6F|1|1|G|1233
4U6F|1|1|G|1234
4U6F|1|1|U|1235
4U6F|1|1|G|1236
4U6F|1|1|G|1237
4U6F|1|1|C|1238
*
4U6F|1|1|G|1250
4U6F|1|1|A|1251
4U6F|1|1|A|1252
4U6F|1|1|U|1253
4U6F|1|1|C|1254
4U6F|1|1|C|1255
4U6F|1|1|G|1256
4U6F|1|1|C|1257
4U6F|1|1|U|1258
4U6F|1|1|A|1259
4U6F|1|1|A|1260
4U6F|1|1|G|1261
4U6F|1|1|G|1262
*
4U6F|1|1|C|1277
4U6F|1|1|A|1278
4U6F|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains