J3_4UG0_037
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUG*UUAGAUGUCCGGGGCUG
- Length
- 97 nucleotides
- Bulged bases
- 4UG0|1|S2|G|1256, 4UG0|1|S2|A|1258, 4UG0|1|S2|A|1260, 4UG0|1|S2|G|1274, 4UG0|1|S2|G|1285, 4UG0|1|S2|A|1287, 4UG0|1|S2|U|1300, 4UG0|1|S2|U|1306, 4UG0|1|S2|C|1317, 4UG0|1|S2|G|1507, 4UG0|1|S2|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UG0|1|S2|C|1237
4UG0|1|S2|U|1238
4UG0|1|S2|U|1239
4UG0|1|S2|A|1240
4UG0|1|S2|A|1241
4UG0|1|S2|U|1242
4UG0|1|S2|U|1243
4UG0|1|S2|U|1244
4UG0|1|S2|G|1245
*
4UG0|1|S2|C|1254
4UG0|1|S2|G|1255
4UG0|1|S2|G|1256
4UG0|1|S2|G|1257
4UG0|1|S2|A|1258
4UG0|1|S2|A|1259
4UG0|1|S2|A|1260
4UG0|1|S2|C|1261
4UG0|1|S2|C|1262
4UG0|1|S2|U|1263
4UG0|1|S2|C|1264
4UG0|1|S2|A|1265
4UG0|1|S2|C|1266
4UG0|1|S2|C|1267
4UG0|1|S2|C|1268
4UG0|1|S2|G|1269
4UG0|1|S2|G|1270
4UG0|1|S2|C|1271
4UG0|1|S2|C|1272
4UG0|1|S2|C|1273
4UG0|1|S2|G|1274
4UG0|1|S2|G|1275
4UG0|1|S2|A|1276
4UG0|1|S2|C|1277
4UG0|1|S2|A|1278
4UG0|1|S2|C|1279
4UG0|1|S2|G|1280
4UG0|1|S2|G|1281
4UG0|1|S2|A|1282
4UG0|1|S2|C|1283
4UG0|1|S2|A|1284
4UG0|1|S2|G|1285
4UG0|1|S2|G|1286
4UG0|1|S2|A|1287
4UG0|1|S2|U|1288
4UG0|1|S2|U|1289
4UG0|1|S2|G|1290
4UG0|1|S2|A|1291
4UG0|1|S2|C|1292
4UG0|1|S2|A|1293
4UG0|1|S2|G|1294
4UG0|1|S2|A|1295
4UG0|1|S2|U|1296
4UG0|1|S2|U|1297
4UG0|1|S2|G|1298
4UG0|1|S2|A|1299
4UG0|1|S2|U|1300
4UG0|1|S2|A|1301
4UG0|1|S2|G|1302
4UG0|1|S2|C|1303
4UG0|1|S2|U|1304
4UG0|1|S2|C|1305
4UG0|1|S2|U|1306
4UG0|1|S2|U|1307
4UG0|1|S2|U|1308
4UG0|1|S2|C|1309
4UG0|1|S2|U|1310
4UG0|1|S2|C|1311
4UG0|1|S2|G|1312
4UG0|1|S2|A|1313
4UG0|1|S2|U|1314
4UG0|1|S2|U|1315
4UG0|1|S2|C|1316
4UG0|1|S2|C|1317
4UG0|1|S2|G|1318
4UG0|1|S2|U|1319
4UG0|1|S2|G|1320
4UG0|1|S2|G|1321
4UG0|1|S2|G|1322
4UG0|1|S2|U|1323
4UG0|1|S2|G|1324
*
4UG0|1|S2|U|1504
4UG0|1|S2|U|1505
4UG0|1|S2|A|1506
4UG0|1|S2|G|1507
4UG0|1|S2|A|1508
4UG0|1|S2|U|1509
4UG0|1|S2|G|1510
4UG0|1|S2|U|1511
4UG0|1|S2|C|1512
4UG0|1|S2|C|1513
4UG0|1|S2|G|1514
4UG0|1|S2|G|1515
4UG0|1|S2|G|1516
4UG0|1|S2|G|1517
4UG0|1|S2|C|1518
4UG0|1|S2|U|1519
4UG0|1|S2|G|1520
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S RIBOSOMAL PROTEIN S10
- Chain SM
- 40S RIBOSOMAL PROTEIN
- Chain SP
- 40S RIBOSOMAL PROTEIN S15
- Chain SQ
- 40S RIBOSOMAL PROTEIN S16
- Chain SS
- 40S RIBOSOMAL PROTEIN S18
- Chain SU
- 40S RIBOSOMAL PROTEIN S20
- Chain Sd
- 40S RIBOSOMAL PROTEIN S29
- Chain Sf
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
Coloring options: