J3_4UJC_003

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCCUCCCG*CGGGCC*GGUUCUCUCGGG

Length

26 nucleotides

Bulged bases

4UJC|1|A2|U|973, 4UJC|1|A2|U|1205, 4UJC|1|A2|U|1208

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|970
4UJC|1|A2|C|971
4UJC|1|A2|C|972
4UJC|1|A2|U|973
4UJC|1|A2|C|974
4UJC|1|A2|C|975
4UJC|1|A2|C|976
4UJC|1|A2|G|977
*
4UJC|1|A2|C|1052
4UJC|1|A2|G|1053
4UJC|1|A2|G|1054
4UJC|1|A2|G|1055
4UJC|1|A2|C|1056
4UJC|1|A2|C|1057
*
4UJC|1|A2|G|1203
4UJC|1|A2|G|1204
4UJC|1|A2|U|1205
4UJC|1|A2|U|1206
4UJC|1|A2|C|1207
4UJC|1|A2|U|1208
4UJC|1|A2|C|1209
4UJC|1|A2|U|1210
4UJC|1|A2|C|1211
4UJC|1|A2|G|1212
4UJC|1|A2|G|1213
4UJC|1|A2|G|1214

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BF

60S RIBOSOMAL PROTEIN L7